ImageJ 101 For Every PhD with Image Data!

Things about ImageJ that I wish someone told me about (Macro and Batch Processing Features) #imagej (long title)

A picture is worth a thousand words, and when you acquire an image for your research, be sure to consider every pixel as a potential source of data!

My favorite software is certainly ImageJ because it is free, open-source, and has many powerful applications that convert scientific images to publishable data and beautiful figures.

To celebrate my long friendship with ImageJ, the best buddy during Ph.D. and postdoc studies, I made this video and hope this will pay it forward to the next generation of scientists.

In this video, let's take look at the common applications of ImageJ:
🧫Counting Cell
📐Length and area measurement
🌡Gel Band intensity
🔬Fluorescence quantification
🗿3D volume calculation
🦠Cell migration speed

Recently, I have also discovered the tool of automating Image Analysis and really wished I had the knowledge sooner!
Timestamps:
Start 0:00
History of Image J and common application 1:34
Basics of Length and Area analysis 4:10
Basics of Intensity Measurement 7:45
3D volume calculation 9:00
ImageJ FIJI macro scripts and Batch processing script 10:21
ImageJ Download:
https://imagej.net/Fiji/Downloads

Tutorials and examples:
https://imagej.nih.gov/ij/docs/examples/index.html

Also check out:
Simple Way to Organize Computer Files| Tips for researchers!
https://youtu.be/77-SPK8PexY

How to Process Data and Summarize Statistics
https://youtu.be/ILy8URgT1Eo

How to create a geographical heat map with excel | Visualize global coronavirus cases
https://youtu.be/NSM3xbhtqRA

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About me:
I am a biologist finishing the 6th-year postdoc. I grew up in Hong Kong, have worked in the US and now living in France, now searching for my next role in private sectors of science.

*Recruiters, please contact me for working opportunities: https://www.linkedin.com/in/verabschan/*

Before I conclude my time as a postdoc, I really hope to make YouTube videos that are tailored for the younger science community. These are basically what I would share if you find me as a postdoc in your lab. I hope my personal tips will provide some positivity, support, and encouragement to those who are on the journey of academic research.

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Vlog videos:

How I arrived in France + Long-Stay Visa tips + Euraxess
https://youtu.be/ZBfldkHhyNU

How I handle the unpredictable future (and work productively from home)
https://youtu.be/uLXl4Gwz7RY

Видео ImageJ 101 For Every PhD with Image Data! канала PhDCoffeeTime