Proteome Annotations | Bacterial Genomes | PATRIC Part 3 | Lecture 63 | Dr. Muhammad Naveed

Proteome Comparison:
Comparing Annotated Proteins Across Genome.
PATRIC’s Proteome Comparison tool can readily identify insertions and deletions in up to nine target genomes that are compared with one reference, which can be a researcher’s personal genome in PATRIC. This genome has been annotated outside PATRIC, any publicly available genomes in PATRIC, or a set of proteins you have saved in PATRIC as a feature group.

The Proteome Comparison tool is based on the original Sequence-based Comparison tool part of RAST[1]. This tool colors each gene based on protein similarity using BLASTP and marks each gene as either unique, a unidirectional best hit, or a bidirectional best hit compared to the reference genome. The output includes a whole-genome schematic that is colored based on BLAST. A table that details all the results can be downloaded for further analysis, as can a scalable vector graphic (SVG) diagram of the effects of publication quality.
PATRIC link: https://www.patricbrc.org/

About Dr. Muhammad Naveed
(Associate Professor, Biotechnology, University of Central Punjab, Lahore)
With distinction, Dr. Muhammad Naveed obtained a Ph.D. degree in Biotechnology (Genomics & Bioinformatics) from Quaid-e-Azam University, Islamabad. He has won Ph.D. indigenous & IRSIP scholarships from HEC. He has done Pre-Doc research at the University of Ghent, Belgium. HEC awarded him the best Ph.D. (IRSIP) Scholar of the year in 2013 & QAU honored him as “Distinguished Alumni” in 2017. He is doing research projects in Bioinformatics & Molecular Biotechnology. He has supervised 45 MSc. and 50 MPhil. & 01 Ph.D. He has published 76 Research articles with 283 impact factor and 1000 citations, 01 book, and 03 book chapters. He has been awarded distinguished “Researcher of the Years (2016, 2018 & 2019)” by UoG and UCP.
#Proteome #ProteomicAnalysis #PATRIC

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