Molecular Dynamics Simulation | Gromacs Installation (Win&Linux)| BeginnerTutorial | Bioinformatics

In this video we will learn how to install the GROMACS in windows (steps are similar in ubuntu) and I am also going to show you a beginner tutorial of MD simulation Protein in water.

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Molecular dynamics is a computer simulation method for analyzing the physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system.

Minimum System Requirement
- Intel Core i5 processor
- 16 GB RAM
- 1 TB hard disk
- 4 GB Graphic Card

MD simulations software’s: https://en.wikipedia.org/wiki/Category:Molecular_dynamics_software
Gromacs: http://manual.gromacs.org/documentation/
Gromacs Tutorial: http://www.mdtutorials.com/gmx/lysozyme/index.html
CUDA installation: https://www.pugetsystems.com/labs/hpc/How-to-install-CUDA-9-2-on-Ubuntu-18-04-1184/
GPU installation : https://www.nvidia.com/en-sg/data-center/gpu-accelerated-applications/gromacs/
Gromacs Installation: http://manual.gromacs.org/documentation/2019/install-guide/index.html
ions.mdp : https://bit.ly/3k4LbtF
mini.mdp: https://bit.ly/3bxIqxD
NVT.mdp: https://bit.ly/3i3VBJa
NPT.mdp: https://bit.ly/35anZWz
md.mdp: https://bit.ly/357XJMx

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