FIJI (ImageJ): Convert Label Images into Well-Separated Binary Masks for Image Analysis

This simple tutorial will show you how to convert label images into clean, well-separated binary masks for accurate image analysis.
You’ll learn:
✅ How to use simple tools in Fiji to process label images
✅ The Label Separator tool from the BioVoxxel 3D Box plugin
✅ How to convert labels into ROIs for further analysis

Segmentation of images was done via the HuggingFace space of Cellpose-SAM: superhuman generalization for cellular segmentation at https://huggingface.co/spaces/mouseland/cellpose.

Plugins used:
BioVoxxel 3D - Separate Labels, Labels to 2D Roi Manager
MorphoLibJ

SUBSCRIBE to have first access to new video tutorials: https://www.youtube.com/@johanna.m.dela-cruz

Видео FIJI (ImageJ): Convert Label Images into Well-Separated Binary Masks for Image Analysis канала Johanna M. Dela Cruz