How to Process Single Cell RNAseq with 2 lines of code from fastq to count matrix 🧬

Kallisto bustool https://www.kallistobus.tools/ and Alevin https://salmon.readthedocs.io/en/latest/alevin.html are alignment-free tools to quantify single-cell RNAseq data. I will show you how to process a 10x genomics single-cell RNAseq dataset from fastq to count matrix in two lines of code.

Download the script at https://github.com/crazyhottommy/compbio_tutorials/blob/main/scripts/06_scRNseq_two_lines_from_fastq_to_count_matrix.Rmd

Видео How to Process Single Cell RNAseq with 2 lines of code from fastq to count matrix 🧬 канала chatomics