HOW TO PERFORM GSEA - A tutorial on gene set enrichment analysis for RNA-seq
In this tutorial, we explain what gene set enrichment analysis (GSEA) is and what it offers you. We show you how to run the analysis on your computer and take you through how to interpret the outputs. The tutorial also covers leading edge analysis and analysis of gene networks with Cytoscape.
*** Editors note: If you are having trouble loading your gct file, you should save it as .gct.txt rather than just .txt
The timestamps for the following sections are:
0:09 What is GSEA?
9:09 What software do I need?
9:55 What input files do I need to create?
14:12 What gene set files are available?
19:04 How do I use GSEA software?
35:57 What is leading edge analysis?
40:05 Visualising enriched gene sets as a network
GSEA website (download free software here)
https://www.gsea-msigdb.org/gsea/index.jsp
GSEA User Guide
https://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideFrame.html
The Gene Set Database
https://www.gsea-msigdb.org/gsea/msigdb/index.jsp
Cytoscape network analysis software
https://cytoscape.org/
This tutorial on GSEA is brought to you by Dr Katherine West in the College of Medical Veterinary and Life Sciences at the University of Glasgow, Scotland. Look out for our other videos in this tutorial series that will help you get the most out of your gene expression analysis.
We hope you found this video useful. Please support us by liking the video and consider subscribing for more informative content. Leave us a comment if you thought this video was helpful or if there is further information you would like to share with us and the community. Thank you.
https://www.gla.ac.uk/people/katherinewest
https://twitter.com/GenomicsGurus
https://www.facebook.com/GenomicsGurus
Видео HOW TO PERFORM GSEA - A tutorial on gene set enrichment analysis for RNA-seq канала Genomics Gurus
*** Editors note: If you are having trouble loading your gct file, you should save it as .gct.txt rather than just .txt
The timestamps for the following sections are:
0:09 What is GSEA?
9:09 What software do I need?
9:55 What input files do I need to create?
14:12 What gene set files are available?
19:04 How do I use GSEA software?
35:57 What is leading edge analysis?
40:05 Visualising enriched gene sets as a network
GSEA website (download free software here)
https://www.gsea-msigdb.org/gsea/index.jsp
GSEA User Guide
https://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideFrame.html
The Gene Set Database
https://www.gsea-msigdb.org/gsea/msigdb/index.jsp
Cytoscape network analysis software
https://cytoscape.org/
This tutorial on GSEA is brought to you by Dr Katherine West in the College of Medical Veterinary and Life Sciences at the University of Glasgow, Scotland. Look out for our other videos in this tutorial series that will help you get the most out of your gene expression analysis.
We hope you found this video useful. Please support us by liking the video and consider subscribing for more informative content. Leave us a comment if you thought this video was helpful or if there is further information you would like to share with us and the community. Thank you.
https://www.gla.ac.uk/people/katherinewest
https://twitter.com/GenomicsGurus
https://www.facebook.com/GenomicsGurus
Видео HOW TO PERFORM GSEA - A tutorial on gene set enrichment analysis for RNA-seq канала Genomics Gurus
Показать
Комментарии отсутствуют
Информация о видео
Другие видео канала
![How to use DAVID for functional annotation of genes](https://i.ytimg.com/vi/EuCH5mqRylE/default.jpg)
![The Rise Of Open-Source Software](https://i.ytimg.com/vi/SpeDK1TPbew/default.jpg)
![MAKE YOUR GENOMIC DATA LOOK STUNNING WITH THE UCSC GENOME BROWSER - The Secrets Of Custom Tracks!](https://i.ytimg.com/vi/UvHihNbyCh8/default.jpg)
![GSEAtheory](https://i.ytimg.com/vi/bT00oJh2x_4/default.jpg)
![Drawing and Interpreting Heatmaps](https://i.ytimg.com/vi/oMtDyOn2TCc/default.jpg)
![False Discovery Rates, FDR, clearly explained](https://i.ytimg.com/vi/K8LQSvtjcEo/default.jpg)
![Introduction to Pathway and Network Analysis](https://i.ytimg.com/vi/PqH8yR97DUY/default.jpg)
![STAT115 Chapter 5.6 Gene Set Enrichment Analyses](https://i.ytimg.com/vi/dZja6aeTxpc/default.jpg)
![How to Design Primers for PCR](https://i.ytimg.com/vi/mcOwlFVEino/default.jpg)
![The Beginner's Guide to RNA-Seq - #ResearchersAtWork Webinar Series](https://i.ytimg.com/vi/8lAVfKbRK3I/default.jpg)
![Cytoscape Inroduction and Enrichment Map](https://i.ytimg.com/vi/FStbZ8q8-5Q/default.jpg)
![5 Things I Wish I Knew Before Starting Programming](https://i.ytimg.com/vi/3NndCfFQNHA/default.jpg)
![CRISPR/Cas9 GENOME EDITING - GENE EDITING EXPLAINED!](https://i.ytimg.com/vi/rFQJ5pCCukA/default.jpg)
![GENE ONTOLOGY using TOPPGENE - Free tutorial](https://i.ytimg.com/vi/67LSI8ZA-nY/default.jpg)
![RPKM, FPKM and TPM, Clearly Explained!!!](https://i.ytimg.com/vi/TTUrtCY2k-w/default.jpg)
![Finding Over-Represented Pathways in Gene Lists](https://i.ytimg.com/vi/bN2OakOqOQI/default.jpg)
![Cytoscape PPI Network layouts | High quality network Figures for Publication | Bioinformatics](https://i.ytimg.com/vi/y1a6dZTnkNE/default.jpg)
![How to analyze RNA-Seq data? Find differentially expressed genes in your research.](https://i.ytimg.com/vi/xh_wpWj0AzM/default.jpg)
![KEGG Pathway Database | Pathway analysis of Gene, Protein & Enzyme |Lecture 30 | Dr. Muhammad Naveed](https://i.ytimg.com/vi/17fPig0cJ6A/default.jpg)
![QuickGO - Gene ontology annotation 2017](https://i.ytimg.com/vi/RdxSgafBG48/default.jpg)