AutoFill with Cell Paper recipe applied to a single vesicle and minor overlaps

As promised, I'm working to clean up the algorithm and the rendering. Here is a baby step. I've run the algorithm without the cylinder lipids using a version of it implemented in ePMV.c4D by Ludovic Autin. This fill of just one 39nm diameter vesicle takes 4.79 minutes to fill... I know I can get that down to seconds or hundredths of a second. In this version we see default meshes provided by our shortcut script, but I've replaced three proteins with course molecular surfaces that have more ideal settings, including the purple dimer (11 copies), a beige synaptobrevin, and a slightly less clumsy rendition of ATP synthase- but I'll work on that model more. Other than that, the colors and the models are just rough- you'll notice, in fact, that some of the long thin models of the other synaptobrevins for example, are so "course", that they are just fragmented blobs of polygons. Note also that some of the proteins have minor overlaps because I used our shortcut system that allows this and have not yet relaxed the model.

Again, the authors of "Molecular Anatomy of a trafficking Organelle, whom I contacted through Reinhard Jahn, provided an enormous PDB file showing the theoretical atomistic detail of this vesicle organelle that allowed us to easily generate the recipes for this reasonably accurate stochastically produced, but un-minimized, and early-practice version of their vesicle model. Please see the paper by Takamori et al in Cell 2006- http://www.ncbi.nlm.nih.gov/pubmed/17110340

Видео AutoFill with Cell Paper recipe applied to a single vesicle and minor overlaps канала Graham Johnson