Multivariate D-Square statistics in R/Tocher method of clustering for genetic diversity assessment
Hi there in this video, I have shared the complete procedure involved in Multivariate D-square statistics in plant breeding, using Mahalanobis squared euclidian distance for assessment of genetic diversity in plants.
This is a second order statistics not the most accurate one as compared to Metroglyph analysis but can be used for more number of individuals, with replications only
~ Here I am using the biotools package developed by Prof. Anderson da Silva to do clustering based on Tocher and Modified Tocher Method along with the inter and intra cluster distances.
~ The dataset used here is from
https://sites.google.com/site/tnaustat/plant-breeding-general?authuser=0
~ Cross verify the results if you think about credibility of the analysis
https://drive.google.com/file/d/1DcuE4_LocHpnXtiuuU2AwmAflBtcBSBo/view
Both of them are from TNAU stat
0:00 Introduction
3:18 Coding
Script
https://docs.google.com/document/d/1-9wOnWgbVthYws5FhNrdtjidkAgTjP1gLe5iMPd8b6I/edit?usp=sharing
Видео Multivariate D-Square statistics in R/Tocher method of clustering for genetic diversity assessment канала The Outlier
This is a second order statistics not the most accurate one as compared to Metroglyph analysis but can be used for more number of individuals, with replications only
~ Here I am using the biotools package developed by Prof. Anderson da Silva to do clustering based on Tocher and Modified Tocher Method along with the inter and intra cluster distances.
~ The dataset used here is from
https://sites.google.com/site/tnaustat/plant-breeding-general?authuser=0
~ Cross verify the results if you think about credibility of the analysis
https://drive.google.com/file/d/1DcuE4_LocHpnXtiuuU2AwmAflBtcBSBo/view
Both of them are from TNAU stat
0:00 Introduction
3:18 Coding
Script
https://docs.google.com/document/d/1-9wOnWgbVthYws5FhNrdtjidkAgTjP1gLe5iMPd8b6I/edit?usp=sharing
Видео Multivariate D-Square statistics in R/Tocher method of clustering for genetic diversity assessment канала The Outlier
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